Search results
-
-
Title
-
EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms
-
Author
-
Janies, Daniel, Witter, Zachary, Linchangco, Gregorio V., Jr.
-
Date Created
-
2016
-
Subjects--Topical
-
Genomics, Biology
-
Description
-
Background: One of our goals for the echinoderm tree of life project (http://echinotol.org) is to identify orthologs suitable for phylogenetic analysis from next-generation transcriptome data. The current dataset is the largest assembled for echin...
-
-
Title
-
Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient
-
Author
-
Loraine, Ann, Yao, Jianchao, Chang, Chunqi, Roux, Stanley J.
-
Date Created
-
2008
-
Subjects--Topical
-
Genomics, Bioinformatics
-
Description
-
Background: Currently, clustering with some form of correlation coefficient as the gene similarity metric has become a popular method for profiling genomic data. The Pearson correlation coefficient and the standard deviation (SD)-weighted correlat...
-
-
Title
-
JEDi: Java essential dynamics inspector - a molecular trajectory analysis toolkit
-
Author
-
Jacobs, Donald J., Avery, Chris
-
Date Created
-
2021
-
Subjects--Topical
-
Biology, Proteins
-
Description
-
Background Principal component analysis (PCA) is commonly applied to the atomic trajectories of biopolymers to extract essential dynamics that describe biologically relevant motions. Although application of PCA is straightforward, specialized soft...