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JED: a Java essential dynamics program for comparative analysis of protein trajectories
Title
JED: a Java essential dynamics program for comparative analysis of protein trajectories
Author
Jacobs, Donald J., Ramaprasad, Azhagiya Singam Ettayapuram, David, Charles C.
Date Created
2017
Subjects--Topical
Biology, Proteins
Description
Background: Essential Dynamics (ED) is a common application of principal component analysis (PCA) to extract biologically relevant motions from atomic trajectories of proteins. Covariance and correlation based PCA are two common approaches to dete...
JEDi: Java essential dynamics inspector - a molecular trajectory analysis toolkit
Title
JEDi: Java essential dynamics inspector - a molecular trajectory analysis toolkit
Author
Jacobs, Donald J., Avery, Chris
Date Created
2021
Subjects--Topical
Biology, Proteins
Description
Background Principal component analysis (PCA) is commonly applied to the atomic trajectories of biopolymers to extract essential dynamics that describe biologically relevant motions. Although application of PCA is straightforward, specialized soft...