Search results
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Title
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JED: a Java essential dynamics program for comparative analysis of protein trajectories
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Author
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Jacobs, Donald J., Ramaprasad, Azhagiya Singam Ettayapuram, David, Charles C.
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Date Created
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2017
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Subjects--Topical
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Biology, Proteins
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Description
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Background: Essential Dynamics (ED) is a common application of principal component analysis (PCA) to extract biologically relevant motions from atomic trajectories of proteins. Covariance and correlation based PCA are two common approaches to dete...
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Title
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JEDi: Java essential dynamics inspector - a molecular trajectory analysis toolkit
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Author
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Jacobs, Donald J., Avery, Chris
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Date Created
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2021
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Subjects--Topical
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Biology, Proteins
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Description
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Background Principal component analysis (PCA) is commonly applied to the atomic trajectories of biopolymers to extract essential dynamics that describe biologically relevant motions. Although application of PCA is straightforward, specialized soft...